Dosenbach and Greene Lab GitHub
A link to the lab GitHub. Various tools our lab uses/develops are here.
FIRMM
Easy to set up and use, the Framewise Integrated Real-time MRI Monitoring (FIRMM) software suite provides MRI scanner operators with data quality metrics in real time. Using FIRMM to identify the ideal scan time for each person can reduce total brain MRI scan times and associated costs by 50% or more.
Midnight Scan Club Code
Code for analysis of the MSC dataset
This codebase includes T1 segmentation, surface-based registration, myelin map creation, BOLD preprocessing, BOLD fc-processing, cifti creation, infomap-based network detection, gradient-based parcellation, and data reliability testing.
Psilocybin PFM Github
Code specific to analyses of Psilocybin Precision Functional Mapping data
Please Cite: Joshua S. Siegel, Subha Subramanian, Demetrius Perry, Benjamin P. Kay, Evan M. Gordon, Timothy O. Laumann, T. Rick Reneau, Nicholas V. Metcalf, Ravi V. Chacko, Caterina Gratton, Christine Horan, Samuel R. Krimmel, Joshua S. Shimony, Julie A. Schweiger, Dean F. Wong, David A. Bender, Kristen M. Scheidter, Forrest I. Whiting, Jonah A. Padawer-Curry, Russell T. Shinohara, Yong Chen, Julia Moser, Essa Yacoub, Steven M. Nelson, Luca Vizioli, Damien A. Fair, Eric J. Lenze, Robin Carhart-Harris, Charles L. Raison, Marcus E. Raichle, Abraham Z. Snyder, Ginger E. Nicol, Nico U. F. Dosenbach. Psilocybin desynchronizes the human brain. Nature. 2024.